Part:BBa_K3773519:Design
Circuit to report flup1 expression in vivo
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal AgeI site found at 287
- 1000COMPATIBLE WITH RFC[1000]
Design Notes
Our analysis revealed that the flu gene is usually significantly downregulated when a circuit is introduced to an E. coli cell. This consistent downregulation means that we can use flu gene transcription levels to assess the effect of host-circuit interactions on the host cell. The flu gene controls biofilm production, specifically that of AG431, and we chose to use this gene as an indicator of cellular secretion being affected by introduction of a second, heterologous circuit.
The flu gene controlled by multiple promoters: flup, flup1, and flup2. flup activates both isrC and <i>flu, whereas flup1 and flup2 each only activate the flu gene2; therefore we eliminated the possibility of using flup as our promoter due to its lack of specificity (RegulonDB, 2019). We designed two versions of this circuit, with this version using flup1 as the promoter, and the other, K3773520, using flup2.
We place sfGFP after this promoter, allowing it to report expression.
The sequence inputted as a scar after the RBS is a spacer which has been shown to allow for expression with BBa_B0034 and sfGFP3.
UNS 1 and UNS 10 flank this part in order to allow for easy Gibson assembly as detailed by Torella et al., 20144.
Source
See basic parts.
References
1UniProtKB - P39180 (AG43_ECOLI). UniProt. (2021, April 7). Retrieved October 18, 2021, from https://www.uniprot.org/uniprot/P39180.
2Santos-Zavaleta, A., Salgado, H., Gama-Castro, S., Sánchez-Pérez, M., Gómez-Romero, L., Ledezma-Tejeida, D., ... & Collado-Vides, J. (2019). RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12. Nucleic acids research, 47(D1), D212-D220.
3Clifton, K. P., Jones, E. M., Paudel, S., Marken, J. P., Monette, C. E., Halleran, A. D., ... & Saha, M. S. (2018). The genetic insulator RiboJ increases expression of insulated genes. Journal of biological engineering, 12(1), 1-6.
4Torella, J. P., Boehm, C. R., Lienert, F., Chen, J. H., Way, J. C., & Silver, P. A. (2014). Rapid construction of insulated genetic circuits via synthetic sequence-guided isothermal assembly. Nucleic acids research, 42(1), 681-689.